Clean Food Transportation Act - Prohibits any person from: (1) using a refrigerated motor vehicle to transport food if such vehicle has been used to transport solid waste; (2) using a cargo tank to transport food if such tank has been used to transport nonfood products; and (3) using a motor vehicle to transport asbestos or infectious waste except in motor vehicles normally used to transport them.

Requires specified training for inspectors paid with funds from the Motor Carrier Safety Assistance Program.

Sets forth both civil and criminal penalties.