Ballistic Fingerprints Act of 2000 - Amends the Brady Handgun Violence Prevention Act to require a licensed firearms manufacturer to include with a handgun that is shipped or transported to a licensed dealer a sealed container holding: (1) a projectile discharged from that handgun and a shell casing of such projectile; and (2) information that identifies the handgun, projectile, or shell casing as may be required by the Secretary of the Treasury. Requires such dealer to: (1) notify the Secretary regarding whether a manufacturer complies with such requirements; and (2) transfer the sealed container to the Secretary when the handgun is sold or transferred.

Directs the Secretary to establish and maintain a computer database of all information identifying each projectile, shell casing, and other information included in a transferred sealed container.